Readings

2025

Paper note · AAAI 2025views

Controllable Protein Sequence Generation with LLM Preference Optimization

Reading and implementation notes around controllable generation, preference signals, and protein sequence design.

protein designpreference optimization
2025

Paper note · arXivviews

A Variational Perspective on Generative Protein Fitness Optimization

Notes on fitness optimization, generative modeling, and how optimization objectives shape sequence search.

generative modelingfitness optimization
2025

Paper note · arXivviews

Genome modeling and design across all domains of life with Evo 2

A running note on large biological sequence models and their implications for design workflows.

genome modelsbiological sequences